Node 77
Ancestral DNA sequence:
Probabilities of bases and MPB (most probable base) at each site.
Site	A	C	G	T	MPB	Probability
1	1	0	0	0	A	1
2	0	0	0	1	T	1
3	0	0	1	0	G	1
4	1	0	0	0	A	1
5	0	0	0	1	T	1
6	0	1	0	0	C	1
7	0.01	0	0.99	0	G	0.99
8	0	0	0	1	T	1
9	0.02	0.01	0.97	0	G	0.97
10	0	0	0	1	T	1
11	0	0	0	1	T	1
12	1	0	0	0	A	1
13	0	0	1	0	G	1
14	1	0	0	0	A	1
15	0	0.99	0	0.01	C	0.99
16	1	0	0	0	A	1
17	0.49	0	0.51	0	G	0.51
18	0	1	0	0	C	1
19	0	0	0	1	T	1
20	0	0	0	1	T	1
21	1	0	0	0	A	1
22	0	0	1	0	G	1
23	1	0	0	0	A	1
24	0.57	0	0.42	0	A	0.57
25	0	1	0	0	C	1
26	1	0	0	0	A	1
27	1	0	0	0	A	1
28	0	0	0	1	T	1
29	0	0	0	1	T	1
30	0	0.99	0	0.01	C	0.99
31	1	0	0	0	A	1
32	1	0	0	0	A	1
33	0.98	0	0.02	0	A	0.98
34	0.02	0.55	0.33	0.11	C	0.55
35	0.1	0.06	0.01	0.82	T	0.82
36	0.03	0.34	0.61	0.03	G	0.61
37	0	0	1	0	G	1
38	0	0	0	1	T	1
39	0.51	0.03	0.42	0.04	A	0.51
40	0	0	0	1	T	1
41	1	0	0	0	A	1
42	0	0.4	0	0.6	T	0.6
43	0	1	0	0	C	1
44	0	0	1	0	G	1
45	0	0.97	0	0.03	C	0.97
46	0.61	0	0.39	0	A	0.61
47	1	0	0	0	A	1
48	0	0.97	0	0.03	C	0.97
49	0	0	1	0	G	1
50	0	0	1	0	G	1
51	0	0.04	0	0.96	T	0.96
52	0	1	0	0	C	1
53	0	0	1	0	G	1
54	0	0.02	0	0.98	T	0.98
55	1	0	0	0	A	1
56	1	0	0	0	A	1
57	1	0	0	0	A	1
58	0	0	0	1	T	1
59	0	0	1	0	G	1
60	0	0	1	0	G	1
61	1	0	0	0	A	1
62	1	0	0	0	A	1
63	0	0.98	0	0.02	C	0.98
64	0	1	0	0	C	1
65	0	0	1	0	G	1
66	0	1	0	0	C	1
67	0	0	0	1	T	1
68	0	0	1	0	G	1
69	0	0.64	0	0.36	C	0.64
70	0.01	0	0.99	0	G	0.99
71	0	0	0	1	T	1
72	0.08	0	0.92	0	G	0.92
73	0	0	1	0	G	1
74	1	0	0	0	A	1
75	1	0	0	0	A	1
76	0	0	1	0	G	1
77	0	1	0	0	C	1
78	0.02	0.77	0.13	0.08	C	0.77
79	1	0	0	0	A	1
80	0	0	0	1	T	1
81	0	0	0	1	T	1
82	0.04	0	0.96	0	G	0.96
83	1	0	0	0	A	1
84	0.1	0.5	0.3	0.1	C	0.5
85	1	0	0	0	A	1
86	1	0	0	0	A	1
87	0	0.99	0	0.01	C	0.99
88	1	0	0	0	A	1
89	0	0	0	1	T	1
90	0	0.99	0	0.01	C	0.99
91	0	0	1	0	G	1
92	0.7	0.05	0.24	0	A	0.7
93	0	0.97	0	0.02	C	0.97
94	1	0	0	0	A	1
95	1	0	0	0	A	1
96	0	0.95	0	0.05	C	0.95
97	1	0	0	0	A	1
98	0	0	0	1	T	1
99	0	1	0	0	C	1
100	1	0	0	0	A	1
101	1	0	0	0	A	1
102	0.99	0	0.01	0	A	0.99
103	0	0	1	0	G	1
104	1	0	0	0	A	1
105	0	0.41	0	0.58	T	0.58
106	0	0	1	0	G	1
107	0	0	1	0	G	1
108	0	1	0	0	C	1
109	0	0	1	0	G	1
110	0	0	0	1	T	1
111	0.03	0	0.96	0	G	0.96
112	1	0	0	0	A	1
113	0	0	0	1	T	1
114	0	0	1	0	G	1
115	0	0.99	0	0.01	C	0.99
116	1	0	0	0	A	1
117	0	0.6	0	0.4	C	0.6
118	0	0	0	1	T	1
119	0	1	0	0	C	1
120	0.02	0.02	0.94	0.02	G	0.94
121	1	0	0	0	A	1
122	0	0	0	1	T	1
123	0	0.06	0	0.94	T	0.94
124	0	0	1	0	G	1
125	0	0	1	0	G	1
126	0	0.52	0	0.47	C	0.52
127	0	0	1	0	G	1
128	1	0	0	0	A	1
129	0	0.04	0	0.96	T	0.96
130	0	0	0	1	T	1
131	0	1	0	0	C	1
132	0.34	0.06	0.1	0.49	T	0.49
133	0	1	0	0	C	1
134	0	0	0	1	T	1
135	0	0	1	0	G	1
136	0	0	1	0	G	1
137	0	0	0	1	T	1
138	0	0.02	0	0.98	T	0.98
139	0	0	0	1	T	1
140	1	0	0	0	A	1
141	0	0.98	0	0.02	C	0.98
142	1	0	0	0	A	1
143	0	0	0	1	T	1
144	0	0	1	0	G	1
145	0.03	0	0.97	0	G	0.97
146	0	0	0	1	T	1
147	0	0.01	0	0.99	T	0.99
148	0	0	1	0	G	1
149	1	0	0	0	A	1
150	0.99	0	0.01	0	A	0.99
151	0.02	0	0.98	0	G	0.98
152	1	0	0	0	A	1
153	0	0.79	0	0.21	C	0.79
154	0	0	1	0	G	1
155	0	0	1	0	G	1
156	0	0.95	0	0.05	C	0.95
157	0.96	0	0.04	0	A	0.96
158	0.01	0.63	0	0.36	C	0.63
159	0.38	0.47	0.08	0.06	C	0.47
160	0.64	0	0.36	0	A	0.64
161	0.53	0.34	0.12	0.01	A	0.53
162	0.68	0.08	0.2	0.05	A	0.68
163	0.61	0.27	0.07	0.05	A	0.61
164	0.98	0	0.01	0	A	0.98
165	0.93	0	0.06	0	A	0.93
166	0.01	0.98	0	0.01	C	0.98
167	0.99	0	0.01	0	A	0.99
168	0.9	0.02	0.07	0.01	A	0.9
169	1	0	0	0	A	1
170	0	1	0	0	C	1
171	0	0.94	0	0.05	C	0.94
172	0	0	1	0	G	1
173	1	0	0	0	A	1
174	0.72	0.15	0.11	0.03	A	0.72
175	0.04	0.94	0	0.02	C	0.94
176	0	0	0	1	T	1
177	0.01	0	0.99	0	G	0.99
178	0	0	0	1	T	1
179	0	0	0	1	T	1
180	0	0.28	0	0.72	T	0.72
181	0.06	0	0.94	0	G	0.94
182	0.94	0	0.01	0.06	A	0.94
183	0.52	0.28	0.17	0.03	A	0.52
184	0	0	1	0	G	1
185	0	0	1	0	G	1
186	0.02	0.39	0.14	0.45	T	0.45
187	1	0	0	0	A	1
188	1	0	0	0	A	1
189	0	0.99	0	0.01	C	0.99
190	0	1	0	0	C	1
191	0	0	1	0	G	1
192	0	0.5	0	0.5	T	0.5
193	0	1	0	0	C	1
194	0	0	1	0	G	1
195	0	0.43	0	0.57	T	0.57
196	0	0	0	1	T	1
197	1	0	0	0	A	1
198	0	1	0	0	C	1
199	0	0	0	1	T	1
200	0	0	0	1	T	1
201	0	0.98	0	0.02	C	0.98
202	0	0	1	0	G	1
203	1	0	0	0	A	1
204	0.02	0.05	0.11	0.83	T	0.83
205	0	0	1	0	G	1
206	0	0	0	1	T	1
207	0	0	1	0	G	1
208	0	1	0	0	C	1
209	1	0	0	0	A	1
210	0	0	0	1	T	1
211	0	0	0	1	T	1
212	1	0	0	0	A	1
213	0	1	0	0	C	1
214	0	0	0	1	T	1
215	1	0	0	0	A	1
216	0	1	0	0	C	1
217	0	1	0	0	C	1
218	0	0	0	1	T	1
219	0.46	0.35	0.14	0.05	A	0.46
220	0	0	1	0	G	1
221	1	0	0	0	A	1
222	1	0	0	0	A	1
223	0	0	1	0	G	1
224	0	0	1	0	G	1
225	0.01	0.47	0.01	0.52	T	0.52
226	0	0.99	0	0.01	C	0.99
227	0.02	0	0.98	0	G	0.98
228	0.02	0.34	0.01	0.62	T	0.62
229	0	0	1	0	G	1
230	1	0	0	0	A	1
231	0.99	0	0.01	0	A	0.99
232	1	0	0	0	A	1
233	0	1	0	0	C	1
234	0	0.38	0.01	0.61	T	0.61
235	0.01	0	0.99	0	G	0.99
236	0	0	0	1	T	1
237	0.03	0.06	0.18	0.74	T	0.74
238	0	0	1	0	G	1
239	1	0	0	0	A	1
240	0	0	1	0	G	1
241	0	0	0	1	T	1
242	0	0	0	1	T	1
243	0	0.89	0	0.11	C	0.89
244	0	0	1	0	G	1
245	0	1	0	0	C	1
246	0.04	0.78	0.13	0.05	C	0.78
247	0.02	0	0.98	0	G	0.98
248	0.98	0	0.02	0	A	0.98
249	0	0.8	0	0.2	C	0.8
250	1	0	0	0	A	1
251	1	0	0	0	A	1
252	1	0	0	0	A	1
253	0.28	0.05	0.13	0.54	T	0.54
254	0	0.99	0	0.01	C	0.99
255	0	0.97	0	0.03	C	0.97
256	0.01	0	0.99	0	G	0.99
257	0.97	0.01	0.02	0	A	0.97
258	0.21	0.11	0.3	0.38	T	0.38
259	0	0.16	0	0.84	T	0.84
260	0	0	0	1	T	1
261	0.46	0	0.54	0	G	0.54
262	0.98	0.01	0.01	0	A	0.98
263	0.37	0.25	0.36	0.02	A	0.37
264	0.35	0.5	0.12	0.03	C	0.5
265	0.01	0.97	0	0.02	C	0.97
266	0	0	0	0.99	T	0.99
267	0.78	0.04	0.05	0.13	A	0.78
268	0	0	1	0	G	1
269	1	0	0	0	A	1
270	0.16	0	0.84	0	G	0.84
271	0	0.99	0	0	C	0.99
272	1	0	0	0	A	1
273	0.88	0	0.12	0	A	0.88
274	0	0	1	0	G	1
275	0	1	0	0	C	1
276	0.26	0.08	0.03	0.63	T	0.63
277	0	0	0	1	T	1
278	1	0	0	0	A	1
279	0	0.01	0	0.99	T	0.99
280	0	1	0	0	C	1
281	0	0	1	0	G	1
282	0.48	0.28	0.03	0.21	A	0.48
283	0	0	1	0	G	1
284	1	0	0	0	A	1
285	0	0	0	1	T	1
286	0	0	1	0	G	1
287	1	0	0	0	A	1
288	1	0	0	0	A	1
289	1	0	0	0	A	1
290	0	1	0	0	C	1
291	0	0.56	0	0.44	C	0.56
292	0	0	1	0	G	1
293	1	0	0	0	A	1
294	0	1	0	0	C	1
295	0	1	0	0	C	1
296	0	0	1	0	G	1
297	0	0.96	0	0.03	C	0.96
298	0	0	1	0	G	1
299	1	0	0	0	A	1
300	0.99	0	0.01	0	A	0.99
301	0	0	0	1	T	1
302	0	0	0	1	T	1
303	0	0.04	0	0.96	T	0.96
304	0	0.62	0	0.38	C	0.62
305	0	0	0	1	T	1
306	0.03	0.66	0.08	0.23	C	0.66
307	0	0.01	0	0.99	T	0.99
308	0	1	0	0	C	1
309	0.04	0.63	0.01	0.31	C	0.63
310	0	0	1	0	G	1
311	0	0	1	0	G	1
312	0	0.07	0	0.93	T	0.93
313	0	0.98	0	0.02	C	0.98
314	1	0	0	0	A	1
315	0.8	0.03	0.16	0.01	A	0.8
316	0	0	0	0	-	0
317	0	0	0	0	-	0
318	0	0	0	0	-	0
319	0	0	1	0	G	1
320	0	0	1	0	G	1
321	0	0.01	0	0.99	T	0.99
322	0	0	1	0	G	1
323	1	0	0	0	A	1
324	0.31	0	0.69	0	G	0.69
325	1	0	0	0	A	1
326	0	0.99	0	0	C	0.99
327	0.19	0.14	0.04	0.63	T	0.63
328	0	1	0	0	C	1
329	0	0	1	0	G	1
330	0	0.19	0	0.81	T	0.81
331	0	0	1	0	G	1
332	1	0	0	0	A	1
333	0.07	0	0.93	0	G	0.93
334	0	0.98	0.01	0.02	C	0.98
335	0	0	0	1	T	1
336	0.04	0.05	0.04	0.86	T	0.86
337	0	0.02	0	0.97	T	0.97
338	0.76	0	0.24	0	A	0.76
339	0	0.92	0	0.08	C	0.92
340	0	0	1	0	G	1
341	1	0	0	0	A	1
342	1	0	0	0	A	1
343	0	0	1	0	G	1
344	0	0	1	0	G	1
345	0	0.97	0	0.02	C	0.97
346	0	1	0	0	C	1
347	1	0	0	0	A	1
348	0.98	0	0.02	0	A	0.98
349	0	0	1	0	G	1
350	0	0	0	1	T	1
351	0.01	0	0.98	0	G	0.98
352	0	0	1	0	G	1
353	0	0.99	0	0.01	C	0.99
354	0.46	0.01	0.53	0.01	G	0.53
355	1	0	0	0	A	1
356	0	0	0	1	T	1
357	0	0	0	1	T	1
358	0	0	0	1	T	1
359	0	0	0	1	T	1
360	0	0.02	0	0.98	T	0.98
361	0	0	1	0	G	1
362	1	0	0	0	A	1
363	0.5	0.09	0.05	0.36	A	0.5
364	1	0	0	0	A	1
365	1	0	0	0	A	1
366	0	1	0	0	C	1
367	0.21	0	0.78	0	G	0.78
368	1	0	0	0	A	1
369	0	0.59	0	0.41	C	0.59
370	0.96	0	0.04	0	A	0.96
371	1	0	0	0	A	1
372	1	0	0	0	A	1
373	0	0	1	0	G	1
374	0	1	0	0	C	1
375	0.02	0.02	0.95	0.01	G	0.95
376	0	0	0	1	T	1
377	1	0	0	0	A	1
378	0	1	0	0	C	1
379	0	1	0	0	C	1
380	0	0	1	0	G	1
381	0	0.96	0	0.03	C	0.96
382	0	0	0	1	T	1
383	0	0	0	1	T	1
384	0	0.98	0	0.02	C	0.98
385	0	0.98	0	0.01	C	0.98
386	0.98	0	0.01	0.01	A	0.98
387	0	1	0	0	C	1
388	0	0	1	0	G	1
389	0	0	1	0	G	1
390	0.01	0.1	0	0.89	T	0.89
391	0	0	1	0	G	1
392	1	0	0	0	A	1
393	0	0.98	0	0.02	C	0.98
394	0.98	0	0.02	0	A	0.98
395	1	0	0	0	A	1
396	0	1	0	0	C	1
397	0	1	0	0	C	1
398	0.01	0	0.99	0	G	0.99
399	0.74	0.09	0.15	0.02	A	0.74
400	0	0	1	0	G	1
401	0	0	0	1	T	1
402	0.97	0	0.03	0	A	0.97
403	0	0	0	0	-	0
404	0	0	0	0	-	0
405	0	0	0	0	-	0
406	0	0	0	0	-	0
407	0	0	0	0	-	0
408	0	0	0	0	-	0
409	1	0	0	0	A	1
410	0	0	1	0	G	1
411	0.99	0	0.01	0	A	0.99
412	1	0	0	0	A	1
413	1	0	0	0	A	1
414	1	0	0	0	A	1
415	0	0	1	0	G	1
416	0	0	0	1	T	1
417	0.01	0	0.99	0	G	0.99
418	0	0	1	0	G	1
419	0	0	0	1	T	1
420	0	0	1	0	G	1
421	0	1	0	0	C	1
422	0	0	0	1	T	1
423	0.01	0.96	0.01	0.02	C	0.96
424	1	0	0	0	A	1
425	1	0	0	0	A	1
426	1	0	0	0	A	1
427	0	0	1	0	G	1
428	0	0	0	1	T	1
429	0.02	0.01	0.97	0	G	0.97
430	1	0	0	0	A	1
431	0	1	0	0	C	1
432	0	0.99	0	0.01	C	0.99
433	1	0	0	0	A	1
434	0	0	0	1	T	1
435	0	0.99	0	0.01	C	0.99
436	0	0	1	0	G	1
437	1	0	0	0	A	1
438	1	0	0	0	A	1
439	0	0	1	0	G	1
440	1	0	0	0	A	1
441	0	0	0	1	T	1
442	0	0	1	0	G	1
443	0	0	1	0	G	1
444	0	1	0	0	C	1
445	0	0	0	1	T	1
446	1	0	0	0	A	1
447	0	0.53	0	0.47	C	0.53
448	0	0	0	1	T	1
449	0	0	0	1	T	1
450	0	1	0	0	C	1
451	0	1	0	0	C	1
452	0	0	0	1	T	1
453	0.91	0	0.08	0	A	0.91
454	1	0	0	0	A	1
455	1	0	0	0	A	1
456	0	0.03	0	0.97	T	0.97
457	1	0	0	0	A	1
458	1	0	0	0	A	1
459	1	0	0	0	A	1
460	0	0	0	1	T	1
461	1	0	0	0	A	1
462	1	0	0	0	A	1


The most probable ancestral DNA sequence is:
ATGATCGTGTTAGACAGCTTAGAACAATTCAAACTGGTATATCGCAACGGTCGTAAATGGAACCGCTGCGTGGAAGCCATTGACAACATCGACAACATCAAAGATGGCGTGATGCACTCGATTGGCGATTCTCTGGTTTACATGGTTGAAGACGGCACCAAAAAACAAACCGAACTGTTTGAAGGTAACCGTCGTTACTTCGATGTGCATTACTACCTAGAAGGTCGTGAAACTGTTGAGTTCGCCGACAAATCCGATTTGAACCTAGAGCAAGCTTATCGAGATGAAACCGACCGCGAATTTCTCTCCGGTCAA---GGTGAGACTCGTGAGCTTTACGAAGGCCAAGTGGCGATTTTTGAAAACGACAAAGCGTACCGCTTCCACGGTGACAACCGAGTA------AGAAAAGTGGTGCTCAAAGTGACCATCGAAGATGGCTACTTCCTAAATAAATAA

The most probable DNA sequence without gaps is:
ATGATCGTGTTAGACAGCTTAGAACAATTCAAACTGGTATATCGCAACGGTCGTAAATGGAACCGCTGCGTGGAAGCCATTGACAACATCGACAACATCAAAGATGGCGTGATGCACTCGATTGGCGATTCTCTGGTTTACATGGTTGAAGACGGCACCAAAAAACAAACCGAACTGTTTGAAGGTAACCGTCGTTACTTCGATGTGCATTACTACCTAGAAGGTCGTGAAACTGTTGAGTTCGCCGACAAATCCGATTTGAACCTAGAGCAAGCTTATCGAGATGAAACCGACCGCGAATTTCTCTCCGGTCAAGGTGAGACTCGTGAGCTTTACGAAGGCCAAGTGGCGATTTTTGAAAACGACAAAGCGTACCGCTTCCACGGTGACAACCGAGTAAGAAAAGTGGTGCTCAAAGTGACCATCGAAGATGGCTACTTCCTAAATAAATAA

The accuracy score for that sequence is 0.941258278145696

The accuracy score is defined as the average probability of
the most probable bases.  It is NOT the probability that the
most probable sequence is correct.  That probability is 1.84904053722448e-15.
The natural log of that probability is -33.9241095188821.

Ancestral Protein Sequence:
Column headings:
MPAA = most probable amino acid, pMPAA = probability of MPAA
MPAA2 = second most probable amino acid, pMPAA2 = probability of MPAA2
Ratio = pMPAA/pMPAA2,  Unreliable means Ratio <1.5

MPAA	pMPAA	MPAA2	pMPAA2	Ratio
M	1	A	0	9999	
I	1	A	0	9999	
V	0.99	M	0.0097	102.061855670103	
L	1	A	0	9999	
D	1	A	0	9999	
S	0.51	N	0.49	1.04081632653061	Unreliable
L	1	A	0	9999	
E	0.99	A	0	9999	
Q	1	A	0	9999	
F	1	A	0	9999	
K	1	A	0	9999	
L	0.513238	V	0.273306	1.87788778877888	
V	1	A	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
N	0.61	D	0.39	1.56410256410256	
G	1	A	0	9999	
R	1	A	0	9999	
K	1	A	0	9999	
W	1	A	0	9999	
N	1	A	0	9999	
R	1	A	0	9999	
C	1	A	0	9999	
V	0.99	M	0.0092	107.608695652174	
E	1	A	0	9999	
A	1	R	0	9999	
I	1	A	0	9999	
D	0.576	E	0.384	1.5	Unreliable
N	1	A	0	9999	
I	1	A	0	9999	
D	0.693	G	0.2376	2.91666666666667	
N	1	A	0	9999	
I	1	A	0	9999	
K	1	A	0	9999	
D	0.99	A	0	9999	
G	1	A	0	9999	
V	0.99	A	0	9999	
M	1	A	0	9999	
H	0.99	Y	0.01	99	
S	1	A	0	9999	
I	1	A	0	9999	
G	0.99	A	0	9999	
D	1	A	0	9999	
S	0.99	A	0	9999	
L	1	A	0	9999	
V	1	A	0	9999	
Y	1	A	0	9999	
M	1	A	0	9999	
V	0.97	I	0.03	32.3333333333333	
E	1	A	0	9999	
D	0.98	N	0.02	49	
G	1	A	0	9999	
T	0.598752	I	0.314496	1.90384615384615	
K	0.298496	T	0.219776	1.35818287711124	Unreliable
K	0.591822	Q	0.261954	2.25925925925926	
Q	0.941094	H	0.029106	32.3333333333333	
T	0.99	A	0	9999	
E	0.83	D	0.18	4.61111111111111	
L	0.96	M	0.0396	24.2424242424242	
F	1	A	0	9999	
E	0.609684	D	0.273916	2.2258064516129	
G	1	A	0	9999	
N	1	A	0	9999	
R	1	A	0	9999	
R	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
D	0.88	E	0.13	6.76923076923077	
V	1	A	0	9999	
H	1	A	0	9999	
Y	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
E	1	A	0	9999	
G	1.01	A	0	9999	
R	0.960498	H	0.019008	50.53125	
E	1	A	0	9999	
T	1	A	0	9999	
V	0.9999	I	0.0083	120.469879518072	
E	1	A	0	9999	
F	1	A	0	9999	
A	1	R	0	9999	
D	0.9604	N	0.0196	49	
K	1	A	0	9999	
S	0.5346	T	0.2772	1.92857142857143	
E	0.489753	D	0.470547	1.04081632653061	Unreliable
L	1	A	0	9999	
T	0.245	N	0.192178	1.2748597654258	Unreliable
L	0.976734	I	0.009405	103.852631578947	
E	1	A	0	9999	
Q	0.99	A	0	9999	
A	1	R	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
D	1	A	0	9999	
E	1	A	0	9999	
T	1	A	0	9999	
D	1	A	0	9999	
R	0.99	A	0	9999	
E	1	A	0	9999	
F	1	A	0	9999	
L	0.6618	F	0.3382	1.95683027794205	
S	0.9801	P	0.0099	99	
G	1	A	0	9999	
Q	0.9408	H	0.0392	24	
	0	-	0	0
G	1	A	0	9999	
E	1	A	0	9999	
T	0.99	A	0	9999	
R	1	A	0	9999	
E	1	A	0	9999	
L	0.9718	F	0.0182	53.3956043956044	
Y	0.7372	C	0.2328	3.16666666666667	
E	1	A	0	9999	
G	0.99	A	0	9999	
Q	1	A	0	9999	
V	0.99	A	0	9999	
A	0.9999	V	0.0101	99	
I	1	A	0	9999	
F	1	A	0	9999	
E	0.55	D	0.45	1.22222222222222	Unreliable
N	1	A	0	9999	
D	0.78	N	0.21	3.71428571428571	
K	0.96	E	0.04	24	
A	1	R	0	9999	
Y	1	A	0	9999	
R	0.99	A	0	9999	
F	1	A	0	9999	
H	0.9604	R	0.0098	98	
G	1	A	0	9999	
D	1	A	0	9999	
N	0.98	D	0.02	49	
R	0.99	Q	0.0089	111.23595505618	
V	1	A	0	9999	
	0	-	0	0
	0	-	0	0
R	1	A	0	9999	
K	1	A	0	9999	
V	1	A	0	9999	
V	1	A	0	9999	
L	1	A	0	9999	
K	1	A	0	9999	
V	1	A	0	9999	
T	1	A	0	9999	
I	1	A	0	9999	
E	1	A	0	9999	
D	1	A	0	9999	
G	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
L	0.99	A	0	9999	
N	1	A	0	9999	
K	1	A	0	9999	
X	1	A	0	9999	


The most probable ancestral protein sequence is:
MIVLDSLEQFKLVYRNGRKWNRCVEAIDNIDNIKDGVMHSIGDSLVYMVEDGTKKQTELFEGNRRYFDVHYYLEGRETVEFADKSELTLEQAYRDETDREFLSGQ-GETRELYEGQVAIFENDKAYRFHGDNRV--RKVVLKVTIEDGYFLNKX

The most probable ancestral protein sequence without gaps is:
MIVLDSLEQFKLVYRNGRKWNRCVEAIDNIDNIKDGVMHSIGDSLVYMVEDGTKKQTELFEGNRRYFDVHYYLEGRETVEFADKSELTLEQAYRDETDREFLSGQGETRELYEGQVAIFENDKAYRFHGDNRVRKVVLKVTIEDGYFLNKX

The accuracy score for that sequence is 0.947622324503311

The accuracy score is defined as the average probability of
the most probable amino acids.  It is NOT the probability that the
most probable sequence is correct.  That probability is 2.14937434092451e-05
The natural log of that probability is -10.7477486694018.

